| Analysis |
| Atomic strain | Calculates the atomic-level strain tensors based on an initial reference and a deformed configuration. |
| Bin and reduce | Agregates a particle property over a one- or two-dimensional bin grid. |
| Bond-angle analysis | Performs the bond-angle analysis of Ackland and Jones to determine the local crystal structure. |
| Construct surface mesh | Constructs a polyhedral mesh representing the surface of an atomistic solid. |
| Correlation function | Calculates the spatial cross-correlation function between two particle properties. |
| Dislocation analysis (DXA) | Detects dislocation lines in a crystal. |
| Displacement vectors | Calculates the displacements of particles based on an initial and a deformed configuration. |
| Centrosymmetry parameter | Calculates the centrosymmetry parameter for every particle. |
| Cluster analysis | Decomposes a particle system into clusters of particles. |
| Common neighbor analysis | Performs the common neighbor analysis (CNA) to determine the local crystal structure. |
| Coordination analysis | Determines the number of near neighbors of each particle and computes the radial distribution function. |
| Elastic strain calculation | Calculates the atomic-level elastic strain tensors in crystalline systems. |
| Histogram | Computes the histogram of a particle property. |
| Identify diamond structure | Finds atoms that are arranged in a cubic or hexagonal diamond lattice. |
| Polyhedral Template Matching | Identifies the local crystal structure using the PTM method. |
| Scatter plot | Generates a scatter plot of two particle properties. |
| Voronoi analysis | Computes the coordination number, atomic volume, and Voronoi index of particles from their Voronoi polyhedra. |
| VoroTop analysis | Identifies local structure of particles using the topology of their Voronoi polyhedra. |
| Wigner-Seitz defect analysis | Identifies point defects (vacancies and interstitials) in a crystal lattice. |
| Coloring |
| Ambient occlusion | Performs an ambient occlusion calculation to shade particles. |
| Assign color | Assigns a color to all selected particles. |
| Color coding | Colors particles or bonds based on a property. |
| Fields |
| Create isosurface | Constructs isosurfaces from scalar field data. |
| Modification |
| Affine transformation | Applies an affine transformation to particle coordinates. |
| Create bonds | Creates bonds between particles. |
| Combine particle sets | Merges the particles from two separate files into one dataset. |
| Compute bond lengths | Computes the length of each bond in the system. |
| Compute property | Computes a new property for each particle based a user-defined formula. |
| Coordination polyhedra | Shows coordination polyhedra |
| Delete selected particles | Deletes all selected particles. |
| Freeze property | Takes a snapshot of the current state of a particle property and preserves it over time. |
| Load trajectory | Loads time-dependent atomic positions from a separate trajectory file. |
| Python script | Allows you to write your own modifier type in Python.. |
| Show periodic images | Duplicates particles to display the periodic images of particles. |
| Slice | Cuts out a slice or a cross-section from the structure. |
| Wrap at periodic boundaries | Maps particles outside of the simulation box back into the box. |
| Selection |
| Clear selection | Resets the selection state of all particles. |
| Expand selection | Selects particles that are neighbors of already selected particles. |
| Manual selection | Allows to select particles with the mouse. |
| Invert selection | Inverts the selection state of each particle. |
| Expression select | Selects particles based on a user-defined criterion. |
| Select particle type | Selects particles of one or more types. |
